Within the CPI the following techniques and resources are offered to the faculty for collaborative studies:
| wdt_ID | wdt_created_by | wdt_created_at | wdt_last_edited_by | wdt_last_edited_at | Image | Platforms | Examples of technogies available via platforms | Platform leaders |
|---|---|---|---|---|---|---|---|---|
| 1 | reimerkoester | 15/05/2024 08:21 AM | reimerkoester | 15/05/2024 08:21 AM |  |
DNA & RNA Technologies | DNA and RNA sequencing; exome-Seq, DNA methylation, ChIP-Seq, DNase-Seq, MNase-seq, ATAC-Seq; RNA modifications, Splicing, RNA-protein interactions (e.g. iCLIP), smartSeq, whole transcript | Günther/Braun |
| 2 | reimerkoester | 15/05/2024 08:22 AM | reimerkoester | 16/05/2024 08:49 AM |  |
Single cell technologies | single cell transcriptomics and epigenomics, single cell proteomics and metabolomics | Abplanalp, Günther, Bartkuhn, Samakovlis, Münch |
| 3 | reimerkoester | 15/05/2024 08:22 AM | reimerkoester | 16/05/2024 08:49 AM |  |
Spatial transcriptomics & metabolomics | Spatial transcriptomics (Visium HD, Merscope), Spatial metabolomics & lipidomics, | Savai, Geisslinger, Kurian |
| 4 | reimerkoester | 15/05/2024 08:22 AM | reimerkoester | 16/05/2024 08:52 AM |  |
Advanced flow cytometry | Imaging Flow Cytometry, spectral flow cytometry/cell sorting | Weigert, Herold |
| 5 | reimerkoester | 15/05/2024 08:23 AM | reimerkoester | 15/05/2024 08:23 AM |  |
Proteomics | Protein expression, SILAC, protein-protein- and protein-RNA interactome (pull down), protein modifications, redox proteomics, complexome analysis. | Wittig/Brandes/Münch Offermanns Schmitz |
| 6 | reimerkoester | 15/05/2024 08:23 AM | reimerkoester | 16/05/2024 08:51 AM |  |
Metabolomics & lipidomics | LC-MS/MS based targeted and untargeted analysis of small metabolites and fatty acid derivatives | Fleming, Geisslinger |
| 7 | reimerkoester | 15/05/2024 08:23 AM | reimerkoester | 16/05/2024 08:50 AM |  |
Cellular, organoid & in vivo imaging | Light sheet microscopy, “Multiscale Imaging Platform” inverted and upright two-photon and confocal microscope setups for deep tissue and multimodal (Second Harmonic Generation) | Brandes/Kurian Alexopoulous |
| 8 | reimerkoester | 15/05/2024 08:24 AM | reimerkoester | 16/05/2024 08:50 AM |  |
Exposome technologies | Climate chamber smoking chamber, hypoxia chamber (in vitro/in vivo), aerosolation chamber | Weissmann, Sommer, Windbergs, Fleming |
| 9 | reimerkoester | 15/05/2024 08:24 AM | reimerkoester | 15/05/2024 08:24 AM |  |
Experimental phenotyping and small animal imaging | S2/S3 animal facility, small animal NMR, micro-CT, flat-panel volumetric CT, mouse echocardiography, hybrid fluorescence molecular tomography-CT, laser Doppler, telemetry, live imaging lightsheet microscopy (see Translational Hub 1) | Kojonazarov/Schermuly Wietelmann/Stainier Brandes |
